Cyclopep Builder is Cyclopep's user-friendly web application that facilitates the design, simulation, and visualization of cyclic peptides (CPs) and self-assembling cyclic peptide nanotubes (SCPNs). These molecules are essential in many scientific fields, including biomedicine, nanotechnology, and catalysis. The application offers a straightforward interface that simplifies molecular modeling for researchers and enthusiasts alike, making the process of constructing CPs and SCPNs more accessible.
The platform accommodates a variety of force fields and provides detailed visualization to enhance the understanding of molecular dynamics. It's crafted to assist users in generating molecular topologies needed for simulations, from All-Atom to Coarse-Grain resolutions.
Cyclopep Builder’s development has been supported by a series of research projects funded by the Spanish Agencia Estatal de Investigación (AEI), Xunta de Galicia, and and the ERDF. The computational resources were provided by CESGA (Centro de Supercomputación de Galicia).
As a platform developed with support from leading research institutions, Cyclopep Builder stands as a valuable resource for the scientific community, promoting advanced research and understanding of complex molecular structures.
Cyclopep has been developed by the Computational Biophysical Chemistry group at CiQUS and the Soft Matter & Molecular
Biophysics group at the Faculty of Physics (Universidade de Santiago de Compostela, Spain).
Please contact us at Rebeca.Garcia.Fandino@usc.es
or Angel.Pineiro@usc.es if you are interested in depositing your trajectories or if you have any problem or suggestion.